配合全球化及國際物流之發展趨勢，自由貿易港區為我國目前積極推動之政策方針。港埠機關面臨此新興業務與政策環境的變化，亟須進行業務的檢討與組織之革新。本文目的係探討自由貿易港區組織課題與其發展策略，提出短、中長期因應措施。目前自由貿易港區組織方面有主管機關不明，行政與營運角色混淆不清，港區管理規範不一等課題。本研究依計劃性組織變革之理念，提出未來自由貿易港區組織發展策略有行政與營運分離，港區管理整合兩大方向。短期應以組織變動幅度較小為原則，透過協調機制來綜理自由貿易港區跨部會之事務，中長期則應落實行政與營運分離之組織架構，設置專責港區管理機構，以促進自由貿易港區之發展，達到提升港埠競爭力的目標。

Due to the development trends of globalization and international logistics, the Free Trade Zone (FTZ) is becoming one of the important policies of Taiwan’s government for strengthening the competitive advantage of air/sea port. Therefore, the organizational structure of the administration of air/sea port should make some adjustments or changes to cope with the changes of macro marketing environment. The purpose of this study focused on some issues about organizational changes of FTZ and proposed some development strategies regarding to the short run and the long run. The findings suggest two main strategies, separating the administration as well as the operation of FTZ and coordinating the management of landside area. In the short run, the government should maintain the original structure of organization as could as possible and coordinate different ministries to manage the affairs of FTZ. While in the long run, it should establish a specialized organization to administrate the FTZ for encouraging FTZ development and carrying out the spirit of FTZ.